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diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals.
Disparities in the Management of Pediatric Breast Masses.
Scaling the Discrete-time Wright Fisher model to biobank-scale datasets.
TVB-EduPack-An Interactive Learning and Scripting Platform for The Virtual Brain.
Duration of serum anticapsular antibody after a two-dose regimen of a Haemophilus influenzae type b polysaccharide-Neisseria meningitidis outer membrane protein conjugate vaccine and anamnestic response after a third dose.
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Stephens, Matthew
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Stephens, Matthew
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Gene Expression Profiling
Academic Article
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
Academic Article
Sex-specific and lineage-specific alternative splicing in primates.
Academic Article
Understanding mechanisms underlying human gene expression variation with RNA sequencing.
Academic Article
Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data.
Academic Article
Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes.
Academic Article
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
Academic Article
DNase?I sensitivity QTLs are a major determinant of human expression variation.
Academic Article
Probabilistic segmentation and intensity estimation for microarray images.
Academic Article
Differential gene induction by type I and type II interferons and their combination.
Academic Article
Variance adaptive shrinkage (vash): flexible empirical Bayes estimation of variances.
Academic Article
Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article
Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions.
Academic Article
Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
Academic Article
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
Academic Article
GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.
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Gene Expression Profiling